rs30158750 SNP Detail

Summary

• ID
  rs30158750
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:79647872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGATACT TACTGCGTTA
  GAAAACAAAA CAGAAAAGAA TAAACTTCAG GTATTTACTA ATTCAGTTGT AAATAATAAA
  GGGGGCGGGG TGTGAGGGAA AGAGAAAGAA CATTGGTGCC GTGAAGCATC ATATTAGAGT
  TTGGCAATAG AATCTAGCCC AATAGAAGAC AGCTGGATTT GTTGGGCTAT TAATATTTCA
  R
  AACACTGGAA CTCAAAAAAA AAAAAAAAAC CTTCACTACA GCCTTAGAAT GCAGATTAAA
  AGCATTAGCA TCCTTATGAA AATGGGTTTG ATCTTATGAC CCGCTAATAA ACCCTTTGGG
  ATCCTTCCGG GCTTCCAGGC CACCAATGAA CACCTGTCCT ATCAGTTAGG AACAGTTTGC
  TATCCCACTA AACAAATGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49606379	NES12961565	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30158750					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49606379	NES12961565	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:79647872 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ap1s3	adaptor-related protein complex AP-1, sigma 3			Intron
				Noncoding-Transcript-Variant
Cpgi464	CpG island 464			1363 bp proximal
Rr396122	regulatory region 396122			1126 bp upstream
Rr413837	regulatory region 413837			868 bp proximal
Rr413838	regulatory region 413838			1807 bp proximal
Tssr12440	transcription start site region 12440			11 bp downstream
Tssr12441	transcription start site region 12441			1811 bp downstream
Tssr12442	transcription start site region 12442			1929 bp downstream