rs30159242 SNP Detail

Summary

• ID
  rs30159242
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:15011207 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGCTGGC ATCCCATGTC
  ACTCTAGCTG CCGGACAACG TGGTCAGACA GACGGTTGGG GTCAGAAGCA TCCTTGCTGA
  CCACCCATAC TCTGCCTCCT GCTCACAGGA CATGCTGAAG AACACCGCCA AAGGACATCC
  TGACAGGCTG CCCCTTCAGA TGGCGCTGAC GGAGCTCGAG ACCCTGGCAG AGAAGCTAAA
  Y
  GAGAGAAAAA GAGATGCCGA CCAGCGATGC GAAATCAAAC AAATAGCAAA AGCCATAAAC
  GAGAGATACC TGAACAAGGT CCAGAGAGAT GTTCCTCATC TGCTCCGATA ACTGGGGTGG
  CCGGGGCCCG GAATGCCTGG GAGTGCATGC AATGCCTTGG CCTCTGTCCA CTTGTTTTCT
  TAGGAAAGGG ACTCAGTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47419782	NES11494922	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30159242					SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47419782	NES11494922	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:15011207 () rs orientation: forward

Symbol	Name	Function Class
Arhgef10	Rho guanine nucleotide exchange factor 10	within coordinates
Gm16350	predicted gene 16350	within coordinates
Rr400772	regulatory region 400772	273 bp upstream
Rr660140	regulatory region 660140	160 bp proximal
Rr660141	regulatory region 660141	369 bp proximal
Tssr76469	transcription start site region 76469	606 bp upstream
Tssr76470	transcription start site region 76470	673 bp upstream
Tssr76471	transcription start site region 76471	694 bp upstream
Tssr80480	transcription start site region 80480	366 bp downstream