rs30159369 SNP Detail

Summary

• ID
  rs30159369
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:158264996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTACACCTC TAAATAACTT
  TAGTCTCAGA TAGTTAAGGA GAAATAAAAT CACCCCTGAA GCCTGCTTTC TCTCCCTTCC
  CTGTTGTGAT GAGTATTTTC AAGGAAGCCA GGCAGACTGC TCTATTCATT CCCAGCAAGA
  CCTCCAGGTG GTTCTCTAGA ACCTAGCAAC TGGGAGTGCT TCAACCAGAG ACAGAAGCAC
  K
  CGTTTCAGAA AGGCAGCAGC TTTTGGTGTT CTAGAGCACC CATGTGCACG TGCTTGTGCT
  CAGGGTCTGA AGAACTTTCC CCTATGCCCT CAGAAAGAAT GTATCATTTC AAACTAGGAA
  CCAGCTGGGA CCAGATAGAT ATCTGAATGG AGGGTACTGG AGGGAACGTT GAAACAAAGA
  ATGTAGGATG TTGCTAACCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45400668	mCV25102039	ABI	CRAMUS_MOUSE	f	SNP	T	T	G					G		G
ss47494584	NES10303238	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	T	G		G	G	G	T	G	G	G	G	G
ss136136848	ENSMUSSNP1810589	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30159369					SNP	T	T	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47494584	NES10303238	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:158264996 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13981	CpG island 13981	1607 bp proximal
Lrrc7	leucine rich repeat containing 7	within coordinates
Tssr36312	transcription start site region 36312	1975 bp downstream
Tssr36313	transcription start site region 36313	1999 bp downstream