rs30159870 SNP Detail

Summary

• ID
  rs30159870
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:62311431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGCA GCTTAAAAAA TAAAATAAAA
  W
  TTAAAAAAAG GCAGAAGGAT GTGCC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39653136	mCV23224870	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	T
ss147265766	ENSMUSSNP5910479	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30159870					SNP	A	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:62311431 () rs orientation: forward

Symbol	Name	Function Class
Adrb2	adrenergic receptor, beta 2	within coordinates
Cpgi10125	CpG island 10125	606 bp proximal
Gm9949	predicted gene 9949	1675 bp upstream
Rr393783	regulatory region 393783	1239 bp upstream
Rr539062	regulatory region 539062	503 bp distal
Rr539063	regulatory region 539063	1872 bp distal
Rr539064	regulatory region 539064	531 bp proximal
Rr539065	regulatory region 539065	642 bp proximal
Rr539066	regulatory region 539066	1589 bp proximal
Rr539067	regulatory region 539067	1846 bp proximal
Tssr151487	transcription start site region 151487	1759 bp upstream
Tssr153622	transcription start site region 153622	498 bp upstream
Tssr153623	transcription start site region 153623	1588 bp downstream