rs30160131 SNP Detail

Summary

• ID
  rs30160131
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:15012193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGGCATG GCTCAGAAGG
  CGGCTGGGAC CATCTGGGGC AAGGGCACTG TGTTTCCTGT TAGGAGCATG AAGTGACAGT
  GACGTTCTGT GGTACCGATC AGGGTAGAGC ATCCTTCCAG GAGCTGATGG GCTTCTCCTT
  GGTTTGGTGA CATAGAGCGT GGCAGACAGT AAGAAGTACA GCCTCTGGGG GTGTAGCTCA
  W
  TGGTTGAGCT CCTCATGGGT AGGTACTCAT GAAGCCCTGG GCTTGGTCAC CATGAGCGGC
  AAATCGGCCA CAGAAAATTG GGTCTAGATG CAGATTTACC TTTGCTTCAG AGTCAGCTGG
  TAAGTGAGCT CACCCCCCCA GCACTGATGA CCATAAGATG TGTAGTTTAA AGTCACTCAG
  CGAGCCCGGT GGCTTCTCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss47419791	NES11494931	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs30160131					SNP	A	A	A	A	A	A	A	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47419791	NES11494931	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:15012193 () rs orientation: forward

Symbol	Name	Function Class
Arhgef10	Rho guanine nucleotide exchange factor 10	within coordinates
Gm16350	predicted gene 16350	607 bp upstream
Rr400772	regulatory region 400772	413 bp downstream
Rr660140	regulatory region 660140	618 bp distal
Rr660141	regulatory region 660141	117 bp distal
Tssr76469	transcription start site region 76469	371 bp downstream
Tssr76470	transcription start site region 76470	294 bp downstream
Tssr76471	transcription start site region 76471	280 bp downstream
Tssr80480	transcription start site region 80480	603 bp upstream