rs30161335 SNP Detail

Summary

• ID
  rs30161335
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78353293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATATATCA ATTCCAGACT
  GAGAGAGGCA AGAACAGAGC CAGGAGGAGT TGAGAGAGAA CTGCTAGTAA ATATTTGATG
  ATACTTGAAA AATGCCCAAT GTTTGTGAAA CATCACATCC CATTTAAACC AATTTCATTA
  TCCACGGTTA AAGCATAACT ATCCGCTTCT GTGCTAGACA GAGTCTGCAC ACCTGTAATC
  Y
  CCACACTTAG GTACCTGAGG CAGGAGGATG GGGAATCCAA GTCTAGTTTG GCATACATAG
  AAAGGACACG TCTCAAAGGA AAAAGAAATC CAAGTGAAAC ATGGTGGCAT AAATCTGAAA
  TGCTGGCACT CAGCAGACTG AGGCAGAAGG ATTGCTGTGA GTTCCAGTTC GCTCTGGGTT
  GCAAAGTAAG ATATCTCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46379008	mCV25043858	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss136667714	ENSMUSSNP5847355	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
ss323016285	CHEV_9_78293818	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30161335					SNP	C	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78353293 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22068	CpG island 22068	1969 bp proximal
Gm17324	predicted gene, 17324	1854 bp downstream
Rr683554	regulatory region 683554	1707 bp proximal