rs30161601 SNP Detail

Summary

• ID
  rs30161601
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51116140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTC CTGCCATTCT ATGCTCAAAG
  S
  AACAGGGCTC AGGAGAAGAG TGCCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45402692	mCV25351807	ABI	CRAMUS_MOUSE	f	SNP	G	C	C
ss320761981	CHEV_3_51012641	CHEVERUD	SCREENING_POP	f	SNP				C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs30161601					SNP	G	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51116140 () rs orientation: forward

Symbol	Name	Function Class
Rr576240	regulatory region 576240	1770 bp distal
Rr576241	regulatory region 576241	950 bp proximal
Tssr29031	transcription start site region 29031	1568 bp upstream
Tssr29032	transcription start site region 29032	1593 bp upstream
Tssr29033	transcription start site region 29033	1633 bp upstream
Tssr29034	transcription start site region 29034	1648 bp upstream
Tssr33189	transcription start site region 33189	1461 bp downstream