rs30161906 SNP Detail

Summary

• ID
  rs30161906
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135145316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCG CCACCCCGCC CCGCCCTGCC
  S
  GGATCGCGGC GGTTTTCAGG GTTCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45402497	mCV23959335	ABI	CRAMUS_MOUSE	f	SNP	G	G	C
ss135926097	ENSMUSSNP5118760	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		C
ss320971814	CHEV_3_135102519	CHEVERUD	SCREENING_POP	f	SNP				G	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30161906					SNP	G	G	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135145316 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930539J05Rik	RIKEN cDNA 4930539J05 gene			890 bp upstream
Cpgi13855	CpG island 13855			within coordinates
Rr367562	regulatory region 367562			1255 bp downstream
Rr367563	regulatory region 367563			1111 bp downstream
Rr398041	regulatory region 398041			620 bp upstream
Rr585708	regulatory region 585708			1515 bp distal
Rr585709	regulatory region 585709			1311 bp distal
Rr585710	regulatory region 585710			980 bp distal
Rr585711	regulatory region 585711			334 bp distal
Rr585712	regulatory region 585712			189 bp distal
Rr585713	regulatory region 585713			within coordinates
Rr585714	regulatory region 585714			1313 bp proximal
Tssr1058	transcription start site region 1058			707 bp downstream
Tssr31809	transcription start site region 31809			1429 bp downstream
Tssr31810	transcription start site region 31810			1402 bp downstream
Tssr31811	transcription start site region 31811			1252 bp downstream
Tssr31812	transcription start site region 31812			1165 bp downstream
Tssr31813	transcription start site region 31813			1103 bp downstream
Tssr31814	transcription start site region 31814			1070 bp downstream
Tssr31815	transcription start site region 31815			1015 bp downstream
Tssr31816	transcription start site region 31816			971 bp downstream
Tssr31817	transcription start site region 31817			775 bp downstream
Tssr31818	transcription start site region 31818			502 bp downstream
Tssr31819	transcription start site region 31819			492 bp downstream
Tssr31820	transcription start site region 31820			457 bp downstream
Tssr31821	transcription start site region 31821			381 bp downstream
Tssr31822	transcription start site region 31822			115 bp downstream
Tssr31823	transcription start site region 31823			86 bp downstream
Tssr31824	transcription start site region 31824			55 bp downstream
Tssr35782	transcription start site region 35782			1549 bp upstream
Tssr35783	transcription start site region 35783			917 bp upstream
Tssr35784	transcription start site region 35784			850 bp upstream
Tssr35785	transcription start site region 35785			816 bp downstream
Ube2d3	ubiquitin-conjugating enzyme E2D 3			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant