rs30162473 SNP Detail

Summary

• ID
  rs30162473
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32450910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATCC GCATCCAATT TGGGAGAGCC
  R
  CCCTTCATCT TGCCCTCCTT TCGTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45402705	mCV24815152	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss134749289	ENSMUSSNP6955193	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
ss320698065	CHEV_3_32295683	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30162473					SNP	G	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32450910 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13056	CpG island 13056	within coordinates
Gm56797	predicted gene, 56797	304 bp upstream
Gm65709	predicted gene, 65709	within coordinates
Pik3ca	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	293 bp upstream
Rr397633	regulatory region 397633	91 bp upstream
Rr574952	regulatory region 574952	98 bp distal
Rr574953	regulatory region 574953	within coordinates
Rr574954	regulatory region 574954	420 bp proximal
Rr574955	regulatory region 574955	630 bp proximal
Rr574956	regulatory region 574956	921 bp proximal
Tssr28746	transcription start site region 28746	265 bp upstream
Tssr28747	transcription start site region 28747	346 bp upstream
Tssr28748	transcription start site region 28748	389 bp upstream
Tssr28749	transcription start site region 28749	477 bp upstream
Tssr28750	transcription start site region 28750	507 bp upstream
Tssr28751	transcription start site region 28751	1699 bp upstream
Tssr32929	transcription start site region 32929	1456 bp downstream