rs30163859 SNP Detail

Summary

• ID
  rs30163859
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46142601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAGA GGCACTTTCG GAAGTCTGAG
  R
  ACCTGAGTTC AGTGCTTAGA AGACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46379042	mCV24051256	ABI	CRAMUS_MOUSE	f	SNP		G	A	G
ss136425014	ENSMUSSNP3261473	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss322944009	CHEV_9_46039386	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30163859					SNP	G	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46142601 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	834 bp downstream
Apoc3	apolipoprotein C-III	1747 bp downstream
Cpgi21701	CpG island 21701	798 bp distal
Rr195183	regulatory region 195183	1601 bp distal
Rr206362	regulatory region 206362	200 bp distal
Tssr84847	transcription start site region 84847	1395 bp downstream
Tssr84848	transcription start site region 84848	1317 bp downstream
Tssr84849	transcription start site region 84849	1281 bp downstream
Tssr84850	transcription start site region 84850	1239 bp downstream
Tssr84851	transcription start site region 84851	1204 bp downstream
Tssr84852	transcription start site region 84852	1107 bp downstream
Tssr84853	transcription start site region 84853	1073 bp downstream
Tssr84854	transcription start site region 84854	1060 bp downstream
Tssr84855	transcription start site region 84855	1040 bp downstream
Tssr84856	transcription start site region 84856	1029 bp downstream
Tssr84857	transcription start site region 84857	907 bp downstream
Tssr84858	transcription start site region 84858	870 bp downstream
Tssr84859	transcription start site region 84859	1829 bp upstream
Tssr84860	transcription start site region 84860	1968 bp upstream
Tssr89313	transcription start site region 89313	1328 bp upstream
Tssr89314	transcription start site region 89314	1300 bp upstream
Tssr89315	transcription start site region 89315	1277 bp upstream
Tssr89316	transcription start site region 89316	1257 bp upstream
Tssr89317	transcription start site region 89317	1248 bp upstream
Tssr89318	transcription start site region 89318	1224 bp upstream
Tssr89319	transcription start site region 89319	1214 bp upstream
Tssr89320	transcription start site region 89320	1201 bp upstream
Tssr89321	transcription start site region 89321	1176 bp upstream
Tssr89322	transcription start site region 89322	1093 bp upstream
Tssr89323	transcription start site region 89323	1041 bp upstream
Tssr89324	transcription start site region 89324	1013 bp upstream
Tssr89325	transcription start site region 89325	988 bp upstream
Tssr89326	transcription start site region 89326	954 bp upstream
Tssr89327	transcription start site region 89327	840 bp upstream
Tssr89328	transcription start site region 89328	1796 bp downstream
Tssr89329	transcription start site region 89329	1867 bp downstream
Tssr89330	transcription start site region 89330	1913 bp downstream
Tssr89331	transcription start site region 89331	1946 bp downstream