rs30164212 SNP Detail

Summary

• ID
  rs30164212
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:79437586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACACGTATG TTTCGACCAT
  AAAGGCATTT TTACTGCACA AAACTCAAAT ACAGAAAATG TATCTTTAAT CCTTTCAAGC
  ACTAGGAACA AAAAATTTTA AAAAGTTAAA GGGGGGAAAA AAAACCAGGT TGCAAAGCAT
  TCTGATATTT AAAGTATGTG AAAATTATTA AAGTCATAAC AAAAGAAGTT TATTAAAAGT
  Y
  TGAAAACCAC TCACTCACAC AAAGTTTTTT GGGTTTTGTT TTTGTTTTTT ACAAATTTTA
  AAGAAATTGC CATGATCCAG GCTATTATCC TTTGTGGATG GCCACCCCAA ATAACATCTT
  GGGGATTTGG AAATCTAGAA GAATAAAAAA ACAGAAGGGA AAATGTCCTA ATGATGCAGT
  TTTGAACTCC CAGAGAAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45402627	mCV24189760	ABI	CRAMUS_MOUSE	f	SNP	C	C	T					T
ss47031402	NES10775879	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T		T	T	T	T	T	T	T	T	T
ss135372473	ENSMUSSNP1810422	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30164212					SNP	C	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47031402	NES10775879	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79437586 () rs orientation: forward

Symbol	Name	Function Class
Fnip2	folliculin interacting protein 2	within coordinates
Rr2009	regulatory region 2009	775 bp proximal
Rr375221	regulatory region 375221	1017 bp upstream
Rr578535	regulatory region 578535	1956 bp distal
Rr578536	regulatory region 578536	1635 bp distal
Rr578537	regulatory region 578537	241 bp distal
Rr578538	regulatory region 578538	1269 bp proximal
Tssr29582	transcription start site region 29582	309 bp downstream
Tssr29583	transcription start site region 29583	1731 bp upstream
Tssr33705	transcription start site region 33705	1380 bp downstream
Tssr33706	transcription start site region 33706	1398 bp downstream
Tssr33707	transcription start site region 33707	1416 bp downstream
Tssr33708	transcription start site region 33708	1438 bp downstream
Tssr33709	transcription start site region 33709	1458 bp downstream
Tssr33710	transcription start site region 33710	1479 bp downstream
Tssr33711	transcription start site region 33711	1514 bp downstream
Tssr33712	transcription start site region 33712	1552 bp downstream
Tssr33713	transcription start site region 33713	1595 bp downstream
Tssr33714	transcription start site region 33714	1781 bp downstream
Tssr33715	transcription start site region 33715	1885 bp downstream