rs30164327 SNP Detail

Summary

• ID
  rs30164327
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:77859696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AACCCTCTGA GTATAGAAAT GCCCAGTTCT TGTACAGAAA TCTTTCTCCA GCTGCTGCCC
  TTTTCTTTCT GTCCTGACTC CTCCCTAGCT GATCAGCGGT ACTGTGGAGC AGTTTCCTCA
  GAATGGAAAC TCACCATGTA GTCAAGAATG ATGGCCTTCA CTGGGCAGTG GTGGTGCACG
  CCTGTAATCC CAGCACTTGG GAGTCGGAGC AGGCAGATTT CTGAGTTTGA GGCCAGCCTG
  GTTTACAGAG TGAGTTCCAG GACAGCCAGG GCTACACAGA GAAACCCTGT CTCGAAAAAA
  M
  AAAAACAAGA ACAAACAAAC AAAAAAAGAA TGATGGCCTT CTAGTCAAAC TCCAGCTCAG
  GGGCGTGGGG ATTACATGTG TCTACCAACA CAGGTGGCTC TTGTGTGGTT TTCCTTTTCC
  CCCACACTGA TGGTGCTGAC ACAAGGGCAG TCTGGATGGT AGGTTTTCGA TTGATAGTCC
  TTTCATTCAA AGCAGCCAGT GCAGCCAGAA AGAGACCAAC AGCTGGCTGG TCAGGAGTCA
  GTTGCTATGG CTGTCACATC ACTGTTTATT TAGAGGAAAA TGAACATCAG AAGAGGTGCT
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39653474	mCV22975787	ABI	CRAMUS_MOUSE	f	SNP	A	C	C	C
ss147555307	ENSMUSSNP5297250	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30164327					SNP	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:77859696 () rs orientation: forward

Symbol	Name	Function Class
Atp5f1a	ATP synthase F1 subunit alpha	1772 bp upstream
Cpgi10281	CpG island 10281	1647 bp proximal
Gm52331	predicted gene, 52331	1785 bp downstream
Haus1	HAUS augmin-like complex, subunit 1	within coordinates
Rr393942	regulatory region 393942	1240 bp upstream
Rr541176	regulatory region 541176	1243 bp proximal
Rr541177	regulatory region 541177	1744 bp proximal
Rr541178	regulatory region 541178	1880 bp proximal
Rr541179	regulatory region 541179	1971 bp proximal
Tssr152041	transcription start site region 152041	1988 bp upstream