rs30166077 SNP Detail

Summary

• ID
  rs30166077
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:16239595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAT TTTGGTGTCG CCTAGTGACC
  K
  CTCTGCTGAT AGACTTATCA CCAAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45403321	mCV25303415	ABI	CRAMUS_MOUSE	f	SNP	T	G
ss134642388	ENSMUSSNP5452912	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320670524	CHEV_3_16085431	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs30166077					SNP	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:16239595 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12993	CpG island 12993			1508 bp distal
Gm64384	predicted gene, 64384			1713 bp upstream
Rr573791	regulatory region 573791			1724 bp distal
Rr573792	regulatory region 573792			1223 bp distal
Tssr833	transcription start site region 833			1813 bp upstream
Tssr28476	transcription start site region 28476			1554 bp downstream
Tssr32661	transcription start site region 32661			1744 bp upstream
Tssr32662	transcription start site region 32662			1587 bp upstream
Ythdf3	YTH N6-methyladenosine RNA binding protein 3			Intron
				Noncoding-Transcript-Variant