rs30166543 SNP Detail

Summary

• ID
  rs30166543
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:134806762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGG AGAAGGCGAA ACATTTGTCC
  Y
  AGCTTTCCAA AAGAGGGTTT TCCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45901694	mCV24013518	ABI	CRAMUS_MOUSE	f	SNP	C	C	C					T	C
ss51438869	NES14009630	PERLEGEN	MM_PANEL2	f	SNP	C			C	C	T	C		C	C		T	C	C	T		C
ss133787595	ENSMUSSNP5753707	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C
ss321982535	CHEV_6_134779817	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30166543					SNP	C	C	C	C	C	T	C	T	C	C	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51438869	NES14009630	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:134806762 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18077	CpG island 18077	130 bp proximal
Crebl2	cAMP responsive element binding protein-like 2	355 bp upstream
Gm67917	predicted gene, 67917	within coordinates
Rr368197	regulatory region 368197	86 bp upstream
Rr639726	regulatory region 639726	1057 bp distal
Rr639727	regulatory region 639727	1273 bp distal
Rr639728	regulatory region 639728	within coordinates
Rr639729	regulatory region 639729	286 bp proximal
Rr639730	regulatory region 639730	467 bp proximal
Rr639731	regulatory region 639731	662 bp proximal
Tssr59250	transcription start site region 59250	346 bp upstream
Tssr59251	transcription start site region 59251	417 bp upstream
Tssr59252	transcription start site region 59252	520 bp upstream
Tssr59253	transcription start site region 59253	965 bp upstream
Tssr59254	transcription start site region 59254	1233 bp upstream