rs30166586 SNP Detail

Summary

• ID
  rs30166586
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:127129015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCT CAATCCCCGA CCCCGTGGGG
  K
  CTCGCGCCTC ATCCTTCCGC CAGGA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45900041	mCV24153617	ABI	CRAMUS_MOUSE	f	SNP	G	T	G
ss133629725	ENSMUSSNP5819543	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss321941145	CHEV_6_127102070	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30166586					SNP	G	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:127129015 () rs orientation: forward

Symbol	Name	Function Class
9330179D12Rik	RIKEN cDNA 9330179D12 gene	within coordinates
Ccnd2	cyclin D2	within coordinates
Cpgi18034	CpG island 18034	972 bp distal
Cpgi18035	CpG island 18035	within coordinates
Cpgi18036	CpG island 18036	708 bp proximal
Cpgi18037	CpG island 18037	1227 bp proximal
Gm56941	predicted gene, 56941	991 bp downstream
Rr145781	regulatory region 145781	within coordinates
Rr399942	regulatory region 399942	385 bp upstream
Tssr59021	transcription start site region 59021	1809 bp downstream
Tssr59022	transcription start site region 59022	517 bp upstream
Tssr59023	transcription start site region 59023	1207 bp upstream
Tssr59024	transcription start site region 59024	1590 bp upstream
Tssr63374	transcription start site region 63374	1376 bp upstream
Tssr63375	transcription start site region 63375	1038 bp upstream
Tssr63376	transcription start site region 63376	1013 bp upstream
Tssr63377	transcription start site region 63377	997 bp upstream
Tssr63378	transcription start site region 63378	406 bp downstream