rs30166979 SNP Detail

Summary

• ID
  rs30166979
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:85868690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTTAAGC CTTTGAAAAG
  GAACAGTGTC TTTCAGTCTC GCCTTCACCC AGGGCATGGC TTGGGGCACA TGTGCATGAG
  CCCATCACTA GCTCTTTCAT AAGCAGAGAT GAAGTACGCC TTTGTATGCA AAACTAAAAT
  TGAACCCTCT GGTGATGTCA AGAAATTGGT CTTTTGGGTC CAGAAAGGAG TGGTGCTGTG
  M
  AAACTAGCAG GATCCTGTTA ATGAACAAGG ATTGACCATT GCCAAGGATT TAAAAAAATG
  CATAGTGTTT TAGTGACTTC ATTAGAAATA ATGCTCTTTT GTGCTTGCCT GCTTCTTACT
  GACCTTGTTG CAGATCTGTC AATTACTAAT AAGCTGCTGT TGGTGATACT TTGTGGATTC
  TGTATGAAGA GACTTACTGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47919929	NES12032048	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30166979					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47919929	NES12032048	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:85868690 () rs orientation: forward

Symbol	Name	Function Class
Fbxo7	F-box protein 7	within coordinates
Rr220687	regulatory region 220687	1310 bp proximal
Rr229206	regulatory region 229206	within coordinates
Tssr94946	transcription start site region 94946	within coordinates
Tssr94947	transcription start site region 94947	136 bp upstream
Tssr94948	transcription start site region 94948	168 bp upstream
Tssr94949	transcription start site region 94949	196 bp upstream
Tssr94950	transcription start site region 94950	212 bp upstream
Tssr94951	transcription start site region 94951	231 bp upstream