rs30167258 SNP Detail

Summary

• ID
  rs30167258
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:57799799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCTTCTGC ACTAAAGGAT
  TAGGCTTTAG ACTGATGATG TCAGCAGGCT GACAAGGAAA GCAGGTTGTA GGGGCATTAA
  TATACTTTTC ACTTGAACAC AGGAGACAAC CAATTTCCTG CTCCTCTTTC CTCACCAAGA
  CCAGTGGGCT TTTTCCCTGA CTGAAAGTAT TCAGTGGTCT TTCAAATCTC CCACAAGAAG
  Y
  GGGGGAGGGT CCTATAGTAG GAACCAATCA GCTTGCCTTT CTTTGTCTGG ATTACCCAAT
  CCCCTGTAGT AGCCTGAATC AGCCAACTAA GAGGGAAAGG AAGAACTCAC CCCATCCCCA
  AACATAAAAC TTTAGCACTG CCTGACACAA CTCTGATTTC CAGGTCTTCT GCATTCTCTC
  TCTCTCTCTC TCTCTCTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45901400	mCV23275501	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss133245447	ENSMUSSNP5488192	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs30167258					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:57799799 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17487	CpG island 17487			1614 bp proximal
Rr399671	regulatory region 399671			162 bp upstream
Rr631165	regulatory region 631165			within coordinates
Rr631166	regulatory region 631166			673 bp proximal
Rr631167	regulatory region 631167			1367 bp proximal
Rr631168	regulatory region 631168			1655 bp proximal
Tssr56734	transcription start site region 56734			898 bp upstream
Tssr56735	transcription start site region 56735			1671 bp upstream
Tssr56736	transcription start site region 56736			1723 bp upstream
Tssr56737	transcription start site region 56737			1831 bp upstream
Tssr61164	transcription start site region 61164			1819 bp downstream
Vopp1	vesicular, overexpressed in cancer, prosurvival protein 1			Intron
				Noncoding-Transcript-Variant