rs30167365 SNP Detail

Summary

• ID
  rs30167365
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54412152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCT GTTCTCTGTC CCTACCGTAC
  Y
  TGGGAGATAA CAACAAGAAG TTTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CAST/EiJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss39157807	mCV23057150	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss62393467	NES17236824	PERLEGEN	MM_PANEL2	f	SNP			T		C	C
ss139557175	ENSMUSSNP4540457	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss324635228	CHEV_14_54794370	CHEVERUD	SCREENING_POP	f	SNP				T			T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CAST/EiJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs30167365					SNP	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62393467	NES17236824	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54412152 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
Rr492147	regulatory region 492147	1084 bp distal
Rr492148	regulatory region 492148	1659 bp proximal
Tcra	T cell receptor alpha chain	within coordinates
Traj41	T cell receptor alpha joining 41	1576 bp upstream
Traj42	T cell receptor alpha joining 42	1078 bp upstream
Traj43	T cell receptor alpha joining 43	47 bp upstream
Traj44	T cell receptor alpha joining 44	945 bp downstream
Traj45	T cell receptor alpha joining 45	1805 bp downstream
Tssr125558	transcription start site region 125558	1161 bp downstream
Tssr125559	transcription start site region 125559	1141 bp downstream
Tssr125560	transcription start site region 125560	1105 bp downstream
Tssr125561	transcription start site region 125561	1091 bp downstream
Tssr125562	transcription start site region 125562	294 bp downstream
Tssr125563	transcription start site region 125563	69 bp downstream
Tssr125564	transcription start site region 125564	170 bp upstream
Tssr125565	transcription start site region 125565	259 bp upstream
Tssr125566	transcription start site region 125566	1279 bp upstream
Tssr125567	transcription start site region 125567	1513 bp upstream
Tssr125568	transcription start site region 125568	1532 bp upstream
Tssr125569	transcription start site region 125569	1558 bp upstream
Tssr125570	transcription start site region 125570	1576 bp upstream
Tssr128543	transcription start site region 128543	1962 bp downstream