rs30167719 SNP Detail

Summary

• ID
  rs30167719
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:129157904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAAGAACAG AAGGGCGTCT GTGAGCCCGT CACTGTGGGT
  CTGCAGAGCA GGAGAATGCA GTCGGGATTA GCTATGAGGT TGTTACATTA GTTATTCTAT
  Y
  GGAGCATACA ATACTCGAAT AGTTCTCAGG CAAGAGAAAT GAGCAGCGAG TCACCTTCTA
  ACTGCCAGAG CTGTAGCCAC AGCGTTCTCG CTTTGTACT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
ss45901021	mCV24120188	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss133654151	ENSMUSSNP3254324	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss321948715	CHEV_6_129130959	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
rs30167719					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:129157904 () rs orientation: forward

Symbol	Name	Function Class
Clec2d	C-type lectin domain family 2, member d	within coordinates
Gm53342	predicted gene, 53342	within coordinates
Gm68195	predicted gene, 68195	576 bp downstream
Rr368193	regulatory region 368193	within coordinates
Rr639386	regulatory region 639386	1455 bp distal
Rr639387	regulatory region 639387	316 bp distal
Rr639388	regulatory region 639388	449 bp distal
Rr639389	regulatory region 639389	within coordinates
Rr639390	regulatory region 639390	703 bp proximal
Rr639391	regulatory region 639391	1550 bp proximal
Rr639392	regulatory region 639392	1841 bp proximal
Tssr59096	transcription start site region 59096	311 bp downstream
Tssr59097	transcription start site region 59097	285 bp downstream
Tssr59098	transcription start site region 59098	2 bp downstream
Tssr59099	transcription start site region 59099	10 bp upstream
Tssr59100	transcription start site region 59100	34 bp upstream
Tssr59101	transcription start site region 59101	327 bp upstream
Tssr59102	transcription start site region 59102	402 bp upstream
Tssr59103	transcription start site region 59103	911 bp upstream
Tssr59104	transcription start site region 59104	981 bp upstream
Tssr59105	transcription start site region 59105	1737 bp upstream
Tssr59106	transcription start site region 59106	1761 bp upstream
Tssr59107	transcription start site region 59107	1991 bp upstream
Tssr63546	transcription start site region 63546	1892 bp downstream