rs30167825 SNP Detail

Summary

• ID
  rs30167825
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:85869695 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTCCCACT GATGTTTCAT
  GCTCCCTCCT GGTTTCTTGT GTTTATCTAT GGAGATCTTT CTACTGTGTA TTTAACAGAG
  AAGATCTATG TTTCTTACAA GTAATTCAAT GTAGTTTTTT TTATTGAATA TTAATAGAGG
  AAAAACTACT TGAATATTTT AAATATAAAT GCTACTATTT AATGTTAGAA TTTCCTTAAA
  R
  TTTGGGTTCT TAGTATGGCT TTGTCTATAT CCTATAAAAT TACTAATAGA AGTAAAAAAG
  TCAGGTTTCT CGTTTTATTG TTTTTGTTTA AACCTTAATT GTGAAAGACC AGGTGGTCTA
  TAGGAGTGAT GGGTGGAGAG AAGAATGAAT GATCTTTTCT TTTCTGTTTT GTTCTGGGTG
  TGTCCAGTCT TTTTAGTCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47919935	NES12031995	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30167825					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47919935	NES12031995	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:85869695 () rs orientation: forward

Symbol	Name	Function Class
Fbxo7	F-box protein 7	within coordinates
Rr220687	regulatory region 220687	305 bp proximal
Rr229206	regulatory region 229206	96 bp distal
Tssr94946	transcription start site region 94946	1002 bp downstream
Tssr94947	transcription start site region 94947	855 bp downstream
Tssr94948	transcription start site region 94948	825 bp downstream
Tssr94949	transcription start site region 94949	801 bp downstream
Tssr94950	transcription start site region 94950	788 bp downstream
Tssr94951	transcription start site region 94951	763 bp downstream