rs30168001 SNP Detail

Summary

• ID
  rs30168001
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:141154514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTCTAATC TCCTTAGTTC
  TCTTTCTTTA CTTTTCCATC CATGAAACAC ATGATCTGGA AGGACCCACA TAGACTGCCT
  CAAAGCAGGT TGTAAATAAG TCTTTTCTGT AGTGTATGTA GTTTAGCCAA TCATGGCAAC
  TGTGTTCAAT ATGCAAAACC CACCTGATTA AAACACTGGC CAAACAAACA AAAATGAAAT
  W
  CTTATCCTTT CCTTTCAAGG ACAAAATTAC AGGGATTCCA TGAAATTACC TCCTCCTGGG
  GTGTAAATGT CAACTACCCT GTCCAGAGAT CTAAGGAACT TTTTGACACT GGCATCTTCT
  AGAAATCAGA CAACTCCTTG GAATTTGTAT AGATTTAAAT ATACAGACAG ACCTTCCATG
  GAGTAAAACT GAATCTTAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45403347	mCV24946292	ABI	CRAMUS_MOUSE	f	SNP	T	A	A	A
ss136004451	ENSMUSSNP6310666	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A		A
ss320992230	CHEV_3_141111717	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30168001					SNP	T	A	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141154514 () rs orientation: forward

Symbol	Name	Function Class
Gm66152	predicted gene, 66152	within coordinates
Tssr32030	transcription start site region 32030	442 bp upstream