rs30168694 SNP Detail

Summary

• ID
  rs30168694
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:9617681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCCTCTCT CCATACTCCT
  CAGTAGATAA TTTAGACTCA TTAAAGGAAG ACACTGACAT GCAGTCAAGC TAGAAAAGTC
  ACCATTGTAG TTAATCACCT CCCAAAGGCA AGTCTATATA CCTTTTCTTG TACAAAGGCC
  TTAAAGTTGC TAGGCAAGTA ATCTAGTACT GAGCTAAAGT CCAGGTTCTG TGTGTGTAAT
  R
  TATATGTTTG TGTGGATGTC TATACCAGCA TACACGTGTA TATGTGCTCA CCACCTTTCT
  TTTGAGGAAG GGTCTCACCA TGAAGCCCTA TATATCCTGA AACTCACAAC TGGAATCAGA
  CCATCCTTCA ATTCACAGAT CCTCCACTAT CTGTCTCTCT ATTGATAGAA TTAGAAGGGT
  GTGCCACTAC ACACAGTTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39653805	mCV24399109	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	A
ss146597854	ENSMUSSNP2085337	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30168694					SNP	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:9617681 () rs orientation: forward

Symbol	Name	Function Class
Cetn1	centrin 1	738 bp downstream
Cpgi9693	CpG island 9693	1660 bp proximal
Gm58470	predicted gene, 58470	733 bp upstream
Tssr152399	transcription start site region 152399	1742 bp downstream
Tssr152400	transcription start site region 152400	1755 bp downstream
Tssr152401	transcription start site region 152401	1779 bp downstream