rs30169546 SNP Detail

Summary

• ID
  rs30169546
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:47436625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGAGATT GCCTTTCTTT
  CTTACTGGCT TTGGGGCTCT TGGGAAGCAG AGGAGGTTTC TCTGGGGGTG TGTATCTGAG
  CCTTATTCAT GATACAGTTC CCTACCCTGG CAAGGAAATG CTTGGTGAAG GTGGCAGAGG
  ATCTCAAGCC TTGATTAATC TGTGCTGTGA GCTTTAGGGA GGAGCTTTGC TGAGAGAAAC
  R
  GAATCATAGG AGCAAAAGAG GCTTACCACT AGAAAGAAGG AAGGCAAAAG AAGTCAGGGA
  GAGGGGACCA TAGGGCAGGG AATGGGGGAA GGAAGATGAA GATGAGCATC ATTGTTCCCA
  TGTCAGGTCT AACTAAGAAG AAAGCAGTAA GTTGAAACCT CCAGGGTAAT GTTTTCCAAA
  GAAAGTTCGA AGAACCCTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46920436	NES10931175	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30169546					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46920436	NES10931175	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:47436625 () rs orientation: forward

Symbol	Name	Function Class
Bcorl1	BCL6 co-repressor-like 1	within coordinates
Cpgi22696	CpG island 22696	1763 bp distal
Rr691019	regulatory region 691019	1778 bp distal
Tssr160899	transcription start site region 160899	233 bp downstream