rs30169552 SNP Detail

Summary

• ID
  rs30169552
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:47437807 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCATGCA AGAATTCTGT
  GCTGAGTTTG GATGGGAACA TGAACACTAG AGGGGAATGG AGAGACTAGA GAGTGAAACT
  TGCTACTAAT TGGACAGGAA GGGGGAGAAA ACACGGAGGA TGGCTGTGTG AAGGAAGAGG
  GGGCACTTAG ATCAGTGGGA GTTTTTAGAA AGGAAATTTC TTAATGTTAG CATTGGAAGT
  S
  AGTCTGAGTC TGTGTCTGCT CGAATCTTTA GTGCCAGGAT AGCTAAAGAG GGAGGAAATA
  AGTAATCTCC CTTTGTGTCA CTAGGGGATT CGAGGGCAGT ATTTTATATG ATCTCTTATA
  TGAGCCAGGT ATTATTCATG CCAGTCTGTA AAATGTAGGA AATCGTCCTC TTTCTAAATC
  ATAGCCTTTC CTGCTGTTCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46920442	NES10931106	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30169552					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46920442	NES10931106	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:47437807 () rs orientation: forward

Symbol	Name	Function Class
Bcorl1	BCL6 co-repressor-like 1	within coordinates
Tssr160899	transcription start site region 160899	1415 bp downstream