rs30169939 SNP Detail

Summary

• ID
  rs30169939
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89340694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGTG TCAGCAACAG TGGGAAAGGT
  W
  ATGGTTTGAT TTTGCCAGGC TGAAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45900844	mCV22633803	ABI	CRAMUS_MOUSE	f	SNP	T	A	A	T
ss321852064	CHEV_6_89313706	CHEVERUD	SCREENING_POP	f	SNP					A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30169939					SNP	T	A	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89340694 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17713	CpG island 17713	327 bp distal
Plxna1	plexin A1	1099 bp upstream
Rr146639	regulatory region 146639	93 bp distal
Rr152199	regulatory region 152199	613 bp proximal
Tssr57621	transcription start site region 57621	904 bp upstream
Tssr62008	transcription start site region 62008	1138 bp upstream
Tssr62009	transcription start site region 62009	1075 bp upstream
Tssr62010	transcription start site region 62010	119 bp upstream
Tssr62011	transcription start site region 62011	672 bp downstream
Tssr62012	transcription start site region 62012	783 bp downstream