rs30170502 SNP Detail

Summary

• ID
  rs30170502
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:128071816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTAAGGGAC GGGGGACTGA AATTTAGGGA GGGAGGACTA
  CAGCTTAGGG GAGGGGAGGA CTGAAGATTA GTAGGGAGGA CGGGCAGACA ATAGCTAAGA
  Y
  GGGCAGCACT ACAGGCTGGT GCAAAAGTTG AACAAGGCAG TAGGATCATT TCACAACCCA
  ATGAGTGAGC CAAGGACTGC ACTGCATCCT TTAAAAGGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45900284	mCV22305994	ABI	CRAMUS_MOUSE	f	SNP	C	C	T					C		T
ss51863761	NES14893028	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T		C	T	C	C		C	C	C	C		T
ss133637228	ENSMUSSNP2509449	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
ss321943866	CHEV_6_128044871	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30170502					SNP	C	C	T	T	T	C	T	C	C	T	C	C	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51863761	NES14893028	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:128071816 () rs orientation: forward

Symbol	Name	Function Class
Gm55163	predicted gene, 55163	64 bp downstream
Rr639180	regulatory region 639180	1766 bp distal
Rr639181	regulatory region 639181	329 bp proximal
Rr639182	regulatory region 639182	537 bp proximal
Tspan9	tetraspanin 9	within coordinates