rs30170775 SNP Detail

Summary

• ID
  rs30170775
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:15045416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGGGGAAC TGGATGCAGG
  CACACACACA GCTGGCACTT GGGCAGCATC TCTCTGGGCA GCTGGGGGGT GACCCGGGCA
  GCCAATGGCC AGTTCCTGGA ACAAGTTTGT ATTTAGTCCC TAAATAAAAA ATAGGAAATA
  GCAGCATCTG GGGCTCACTT GCTTTCTTCC TATTATTAAG GCCCTTTTTT TCTTAACGAC
  R
  TGGGGCAGTG TTTGGGGATC GTGTGTGAGG CCCTGTTACA TCGCCCCTAG GCACCCTTTA
  TCTCTGCATC CATGCAGGGT TTCTGTCTCC CAGCTTCCTG CCCTTCCCCT CTAGGTCTCA
  TCCCACTGTA AGACACTACC ATGTTAGTCT CTTCATTCTC CTGGGGAAAC ACACTTCCGA
  CAGAAGGGGC AGCTTTGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47420535	NES11493057	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30170775					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47420535	NES11493057	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:15045416 () rs orientation: forward

Symbol	Name	Function Class
Arhgef10	Rho guanine nucleotide exchange factor 10	within coordinates
Gm35149	predicted gene, 35149	within coordinates
Gm56855	predicted gene, 56855	within coordinates
Gm64037	predicted gene, 64037	58 bp downstream
Rr368499	regulatory region 368499	748 bp downstream
Rr368500	regulatory region 368500	751 bp upstream
Rr660152	regulatory region 660152	767 bp distal
Rr660153	regulatory region 660153	within coordinates
Rr660154	regulatory region 660154	617 bp proximal
Tssr76474	transcription start site region 76474	758 bp downstream
Tssr76475	transcription start site region 76475	712 bp upstream
Tssr76476	transcription start site region 76476	740 bp upstream
Tssr76477	transcription start site region 76477	1584 bp upstream
Tssr80482	transcription start site region 80482	916 bp upstream
Tssr80483	transcription start site region 80483	578 bp downstream