rs30170778 SNP Detail

Summary

• ID
  rs30170778
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:15045459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCATCTCT CTGGGCAGCT
  GGGGGGTGAC CCGGGCAGCC AATGGCCAGT TCCTGGAACA AGTTTGTATT TAGTCCCTAA
  ATAAAAAATA GGAAATAGCA GCATCTGGGG CTCACTTGCT TTCTTCCTAT TATTAAGGCC
  CTTTTTTTCT TAACGACATG GGGCAGTGTT TGGGGATCGT GTGTGAGGCC CTGTTACATC
  K
  CCCCTAGGCA CCCTTTATCT CTGCATCCAT GCAGGGTTTC TGTCTCCCAG CTTCCTGCCC
  TTCCCCTCTA GGTCTCATCC CACTGTAAGA CACTACCATG TTAGTCTCTT CATTCTCCTG
  GGGAAACACA CTTCCGACAG AAGGGGCAGC TTTGAAAAGG CAATGGAACA CTTCCCAGAT
  TCCTACTATA CTTAAGATAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47420538	NES11493058	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	G	T	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30170778					SNP	G	G	G	G	G	G	G	G	G	T	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47420538	NES11493058	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:15045459 () rs orientation: forward

Symbol	Name	Function Class
Arhgef10	Rho guanine nucleotide exchange factor 10	within coordinates
Gm35149	predicted gene, 35149	within coordinates
Gm56855	predicted gene, 56855	within coordinates
Gm64037	predicted gene, 64037	101 bp downstream
Rr368499	regulatory region 368499	791 bp downstream
Rr368500	regulatory region 368500	708 bp upstream
Rr660152	regulatory region 660152	810 bp distal
Rr660153	regulatory region 660153	within coordinates
Rr660154	regulatory region 660154	574 bp proximal
Tssr76474	transcription start site region 76474	801 bp downstream
Tssr76475	transcription start site region 76475	669 bp upstream
Tssr76476	transcription start site region 76476	697 bp upstream
Tssr76477	transcription start site region 76477	1541 bp upstream
Tssr80482	transcription start site region 80482	959 bp upstream
Tssr80483	transcription start site region 80483	535 bp downstream