ATCGC CCCTAGGCAC CCTTTATCTC Y GCATCCATGC AGGGTTTCTG TCTCC Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss47420541 | NES11493059 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | T | T | T | C | T | T | T | C | T | C | C | C |
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
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rs30170780 | SNP | T | T | T | T | T | C | T | T | T | C | T | C | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss47420541 | NES11493059 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr8:15045481 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Arhgef10 | Rho guanine nucleotide exchange factor 10 | within coordinates | ||||||
Gm35149 | predicted gene, 35149 | within coordinates | ||||||
Gm56855 | predicted gene, 56855 | within coordinates | ||||||
Gm64037 | predicted gene, 64037 | 123 bp downstream | ||||||
Rr368499 | regulatory region 368499 | 813 bp downstream | ||||||
Rr368500 | regulatory region 368500 | 686 bp upstream | ||||||
Rr660152 | regulatory region 660152 | 832 bp distal | ||||||
Rr660153 | regulatory region 660153 | within coordinates | ||||||
Rr660154 | regulatory region 660154 | 552 bp proximal | ||||||
Tssr76474 | transcription start site region 76474 | 823 bp downstream | ||||||
Tssr76475 | transcription start site region 76475 | 647 bp upstream | ||||||
Tssr76476 | transcription start site region 76476 | 675 bp upstream | ||||||
Tssr76477 | transcription start site region 76477 | 1519 bp upstream | ||||||
Tssr80482 | transcription start site region 80482 | 981 bp upstream | ||||||
Tssr80483 | transcription start site region 80483 | 513 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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