rs30171029 SNP Detail

Summary

• ID
  rs30171029
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:97805476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGG GTTTTGTTGT TGTTGTTGTT
  K
  TTGTTTTTTC CTTCTGATTC TGGCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45901246	mCV23115504	ABI	CRAMUS_MOUSE	f	SNP	G	T	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30171029					SNP	G	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97805476 () rs orientation: forward

Symbol	Name	Function Class
Mitf	melanogenesis associated transcription factor	within coordinates
Tssr1945	transcription start site region 1945	1199 bp downstream
Tssr57866	transcription start site region 57866	1546 bp downstream
Tssr57867	transcription start site region 57867	1273 bp downstream
Tssr57868	transcription start site region 57868	1251 bp downstream
Tssr57869	transcription start site region 57869	1213 bp downstream
Tssr57870	transcription start site region 57870	1054 bp downstream
Tssr57871	transcription start site region 57871	1036 bp downstream
Tssr57872	transcription start site region 57872	266 bp downstream
Tssr57873	transcription start site region 57873	220 bp downstream
Tssr57874	transcription start site region 57874	203 bp downstream
Tssr57875	transcription start site region 57875	183 bp downstream
Tssr57876	transcription start site region 57876	153 bp downstream
Tssr57877	transcription start site region 57877	745 bp upstream
Tssr57878	transcription start site region 57878	789 bp upstream
Tssr57879	transcription start site region 57879	805 bp upstream
Tssr57880	transcription start site region 57880	858 bp upstream
Tssr57881	transcription start site region 57881	1058 bp upstream
Tssr57882	transcription start site region 57882	1156 bp upstream