rs30171046 SNP Detail

Summary

• ID
  rs30171046
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:85867080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGCTTTGC CGTGCTTACC
  TGTGTGCCTT TGGGAAACTT AATCATTATA AATGGTAATG GGACGGAGCA GTCATGGTTG
  CTGCCTTATG AATTAAGTAG TTTCTTTATA AACATTCTGT AGCCACTTGA GTGTCTGTCC
  GAGTCGTTCA CAACTTAATT CCTATACCAC TGATGACATA TGCCTGAAAG ATTTCAAATG
  M
  GAGGATGTTG GTTTAGAACA GCACCCTTCA CTCTCAGGGT AGCCCCCTTG TTTTCTTTTT
  GACCGTTTGT TTTTATTTTA CGTTTTGAGT GTTTTCCCTA TCTGTCTGTG CATCATCACA
  TGCATGTGGT GCCTGTGGAA GCCAGAAGAG GTGTCAGATC CCCTGCGATT GGTGTTACAG
  ATGCTGCGAA CTGCCATGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47919909	NES12032104	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30171046					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47919909	NES12032104	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:85867080 () rs orientation: forward

Symbol	Name	Function Class
Fbxo7	F-box protein 7	within coordinates
Rr229206	regulatory region 229206	922 bp proximal
Tssr94946	transcription start site region 94946	1603 bp upstream
Tssr94947	transcription start site region 94947	1746 bp upstream
Tssr94948	transcription start site region 94948	1778 bp upstream
Tssr94949	transcription start site region 94949	1806 bp upstream
Tssr94950	transcription start site region 94950	1822 bp upstream
Tssr94951	transcription start site region 94951	1841 bp upstream