rs30171052 SNP Detail

Summary

• ID
  rs30171052
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:85867508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAAGAACA GCCAGTGCCT
  ATAACTAACC GTTGAGCCAC CTCTCCAGCC TCAGCTCTTT CTTGCGATGT CTCATTTTTT
  GAACACTTGG TTCTGTGAGA GCTGTGGTAA TAGAAATAAA ATGAGTTTTA CTGTGTAGAA
  ACTTAGAAGA GTGTTCTTTT GTGCATGTCT GTGAATGTCT CTTTTTATTT ACTTCTTTAA
  R
  TCTTAACCTG TGGTTGCATT TCATGTTAGT CATGATGTCA CACAGGTCTT TCCCAACCAC
  CACTGGTTTC TGGAATGTTC TCATGATCTC ACAGTAGGAG ATCCATTTGG GTGACCAGGA
  TTTTACATCT CATTCTGATC TTTTGTTTTA TTTTTATACT TTTGAAATTG GGTCTGTATA
  GCCCAAACTG AACTCAAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47919915	NES12032080	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30171052					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47919915	NES12032080	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:85867508 () rs orientation: forward

Symbol	Name	Function Class
Fbxo7	F-box protein 7	within coordinates
Rr229206	regulatory region 229206	494 bp proximal
Tssr94946	transcription start site region 94946	1175 bp upstream
Tssr94947	transcription start site region 94947	1318 bp upstream
Tssr94948	transcription start site region 94948	1350 bp upstream
Tssr94949	transcription start site region 94949	1378 bp upstream
Tssr94950	transcription start site region 94950	1394 bp upstream
Tssr94951	transcription start site region 94951	1413 bp upstream