rs30171569 SNP Detail

Summary

• ID
  rs30171569
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:85891864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGAACAT GATGCTAGCC
  TAGAACTTGC AAGGTGCGTA GTATTGCCCT TCTTAGGTAC AGAAATTGGG GTTCCTAGGG
  ACAAGTATTT GGCTTAGATA GGCCTTCTAG CAAGAAGCAG GGAGCATGCA CTGCTTATAA
  GCGTCCCTCC ATCCCAGGTT GCTCTGTGTT TTGTGGGGCA TGTCAGCCAC AGTTGGATAG
  R
  CCAGACTCCA GTTTTCCCCT CAGATTTCCC AGAATTGGCT GAGAAGTCAG GCAGTTCCTG
  TTCTAGAGCT CTTGTCTCAG TTGAGGGTCC GTGGCAGTCC AGATCAGAGG TGTCCCTGAG
  CATGTCTGTG GAGAAGTGCC TTGCTTGTTG ATAGATGCAG GAGGGTCCAG CCTCTGTAAG
  CAGCATCATT CACTGGACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47920087	NES12031528	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30171569					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47920087	NES12031528	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:85891864 () rs orientation: forward

Symbol	Name	Function Class
Rr217171	regulatory region 217171	337 bp proximal
Rr223758	regulatory region 223758	1251 bp proximal
Rr229208	regulatory region 229208	1865 bp distal
Syn3	synapsin III	within coordinates
Tssr98759	transcription start site region 98759	1618 bp downstream
Tssr98760	transcription start site region 98760	1635 bp downstream