rs30171926 SNP Detail

Summary

• ID
  rs30171926
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:85867993 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTGGGCTA ACACTGTTTA
  CTTTCTGAGA TGATCTTCTC AGGTACTTAC GCTAGTGAGT TGAGGTGGAC TGTAGTGTTT
  ATAACAGATT GTCTTGCTTT GCTGCTTTGG GTTGGGTTTT CACTGGGTCC TTCAGCTACT
  TGTTTTGTTG AGATGATGTT GTTATTGAGT TCCAGTGTTA GAAAACAGTT TTCTACTAAA
  R
  TTTATTTTAA ACACTAACAT TGCATTTAAA ATTTTTTTTA ACATTGCATT TTTGATTTTA
  GAATTAGAAG TTAATTTTTG GGCCTTTCAT GTAATTTTTT CCCCCATTTC CTTTTAATTG
  CCTGAATCTC TTAACTGTCT GAGCATTCAG CCTGTGACAC TGGACGTTAG TCAGGATGTG
  ACTGACGGCA TGAGGCTGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	WSB/EiJ
ss47919919	NES12032038	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	WSB/EiJ
rs30171926					SNP	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47919919	NES12032038	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:85867993 () rs orientation: forward

Symbol	Name	Function Class
Fbxo7	F-box protein 7	within coordinates
Rr229206	regulatory region 229206	9 bp proximal
Tssr94946	transcription start site region 94946	690 bp upstream
Tssr94947	transcription start site region 94947	833 bp upstream
Tssr94948	transcription start site region 94948	865 bp upstream
Tssr94949	transcription start site region 94949	893 bp upstream
Tssr94950	transcription start site region 94950	909 bp upstream
Tssr94951	transcription start site region 94951	928 bp upstream