rs30171929 SNP Detail

Summary

• ID
  rs30171929
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:85868179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTTCTAC TAAAATTTAT
  TTTAAACACT AACATTGCAT TTAAAATTTT TTTTAACATT GCATTTTTGA TTTTAGAATT
  AGAAGTTAAT TTTTGGGCCT TTCATGTAAT TTTTTCCCCC ATTTCCTTTT AATTGCCTGA
  ATCTCTTAAC TGTCTGAGCA TTCAGCCTGT GACACTGGAC GTTAGTCAGG ATGTGACTGA
  Y
  GGCATGAGGC TGAGTAATGT CTCTGTTAGT TCTCACAGTT AGTTTGTGTA GCTTGTAGTT
  TGGCATTTTG TGCCCAGAGT GGCAGCGGTT TCTGTTTCTG TCTAGTCATC CTGACTTACC
  ACATCACACC TGGGAAGAAT AACAAATGTG AGGTGGTGAG TTTTACCTCA GTTGCATATA
  AAGGTACCTA ATAACATGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47919923	NES12032042	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30171929					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47919923	NES12032042	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:85868179 () rs orientation: forward

Symbol	Name	Function Class
Fbxo7	F-box protein 7	within coordinates
Rr220687	regulatory region 220687	1821 bp proximal
Rr229206	regulatory region 229206	within coordinates
Tssr94946	transcription start site region 94946	504 bp upstream
Tssr94947	transcription start site region 94947	647 bp upstream
Tssr94948	transcription start site region 94948	679 bp upstream
Tssr94949	transcription start site region 94949	707 bp upstream
Tssr94950	transcription start site region 94950	723 bp upstream
Tssr94951	transcription start site region 94951	742 bp upstream