rs30172077 SNP Detail

Summary

• ID
  rs30172077
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:38763779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTCATAGTA TGTATCCCAA GAATCAAATC AGCGCTAGAG
  ATCACTTATG TAAAGCAAGT TCGCTTAAGT CCAGGGTCCA ACCCCAGCCA AGGAGACCAA
  R
  GTTTTGGACA TTCTTTTGAG AGTTCTAATT TGCATCCAGA GAGGATGCTC AGAGGCCCCG
  GAACCCCGGA AATGTCCTTC AGGTGGTGAT GGGTTCGAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	DBA/2J	LG/J	SM/J
ss39656323	mCV23939992	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss146968966	ENSMUSSNP7227774	ENSEMBL	ENSEMBL_Sanger	f	SNP			G
ss325587769	CHEV_18_38790380	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	DBA/2J	LG/J	SM/J
rs30172077					SNP	A	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:38763779 () rs orientation: forward

Symbol	Name	Function Class
9630014M24Rik	RIKEN cDNA 9630014M24 gene	within coordinates
Arhgap26	Rho GTPase activating protein 26	within coordinates
Cpgi9980	CpG island 9980	726 bp proximal
Gm58701	predicted gene, 58701	1367 bp downstream
Rr393574	regulatory region 393574	1152 bp downstream
Rr393575	regulatory region 393575	95 bp upstream
Rr536560	regulatory region 536560	1604 bp distal
Rr536561	regulatory region 536561	416 bp proximal
Tssr150807	transcription start site region 150807	941 bp upstream
Tssr150808	transcription start site region 150808	1718 bp upstream
Tssr153047	transcription start site region 153047	811 bp downstream
Tssr153048	transcription start site region 153048	834 bp downstream
Tssr153049	transcription start site region 153049	884 bp downstream