rs30172186 SNP Detail

Summary

• ID
  rs30172186
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46036793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGATGGC AGGTACAGCC
  CAGGGTGGAC TGTGTAGTGA GTTTCAGATT AGCCTGGTAT ATAGTAAGTT CCTCTGTCAA
  AAAAACGACT CTTCCAACCA AGCAATAAAC ACTCACACAC ACACACCCTC ACATGTGTTC
  CTATTCTACA CATATGTGGT GTTGATGTAA AAAGATAAAA AAGAAAGGGC TGGAGAGATG
  R
  TTCAGTTTTT AATAGCACTG ACTGCTCTTC CAGAGGTCCT GAGTTAAATT GCCAGGAACC
  ACATGGTGGC TCACAACCAT CTGAAATGGT ATCCCAATGC TCTCTTCTGG TGTGTCTGAA
  GACAGCGACA GTATACTCAC ATACATAAGA TAAATAAATA AATTAGAGAG AGAAAAAAGG
  GGGAGAGAGG GAGAGGGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46379507	mCV25177249	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	G
ss136423286	ENSMUSSNP5020010	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30172186					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46036793 () rs orientation: forward

Symbol	Name	Function Class
Rr678056	regulatory region 678056	855 bp proximal
Rr678057	regulatory region 678057	1924 bp proximal
Sik3	SIK family kinase 3	within coordinates
Tssr84829	transcription start site region 84829	1738 bp upstream