rs30172304 SNP Detail

Summary

• ID
  rs30172304
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:136804322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTT CATCAAGCGT TCAGCTGGCC
  S
  GCTCCCTGCT GCTTCCCAGA TATTT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45901747	mCV24051061	ABI	CRAMUS_MOUSE	f	SNP	C	C	G	C
ss133848550	ENSMUSSNP4954458	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs30172304					SNP	C	?	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136804322 () rs orientation: forward

Symbol	Name	Function Class
BC049715	cDNA sequence BC049715	302 bp upstream
Cpgi18110	CpG island 18110	245 bp proximal
Rr380176	regulatory region 380176	within coordinates
Rr640072	regulatory region 640072	within coordinates
Rr640073	regulatory region 640073	899 bp proximal
Rr640074	regulatory region 640074	1530 bp proximal
Tssr2044	transcription start site region 2044	1133 bp upstream
Tssr59337	transcription start site region 59337	421 bp upstream
Tssr59338	transcription start site region 59338	437 bp upstream
Tssr59339	transcription start site region 59339	475 bp upstream
Tssr59340	transcription start site region 59340	506 bp upstream
Tssr59341	transcription start site region 59341	1090 bp upstream
Tssr59342	transcription start site region 59342	1488 bp upstream
Tssr63834	transcription start site region 63834	1291 bp upstream
Tssr63835	transcription start site region 63835	1228 bp upstream
Tssr63836	transcription start site region 63836	390 bp downstream
Tssr63837	transcription start site region 63837	423 bp downstream
Tssr63838	transcription start site region 63838	442 bp downstream
Tssr63839	transcription start site region 63839	496 bp downstream
Tssr63840	transcription start site region 63840	727 bp downstream
Tssr63841	transcription start site region 63841	800 bp downstream
Tssr63842	transcription start site region 63842	862 bp downstream
Wbp11	WW domain binding protein 11	within coordinates