rs30172401 SNP Detail

Summary

• ID
  rs30172401
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:32305513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTT ATTTCTATTT TTGTTTTCCA
  Y
  GACTGAGAAG CATCTGCAGT GCGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss45902250	mCV24690988	ABI	CRAMUS_MOUSE	f	SNP	T	T	C		T
ss51582915	NES14855673	PERLEGEN	MM_PANEL2	f	SNP				C			T	T		C
ss133098887	ENSMUSSNP3642569	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T			T
ss321777583	CHEV_6_32278578	CHEVERUD	SCREENING_POP	f	SNP						T			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs30172401					SNP	T	T	C	C	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51582915	NES14855673	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:32305513 () rs orientation: forward

Symbol	Name	Function Class
Plxna4	plexin A4	Intron
Rr628093	regulatory region 628093	1044 bp distal
Rr628094	regulatory region 628094	within coordinates
Rr628095	regulatory region 628095	277 bp distal