rs30172668 SNP Detail

Summary

• ID
  rs30172668
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:134808372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCC ACCTGCTAAG GGCTGGGATG
  K
  CCAATGGGAA CCTCATGTTT AGCAT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45902625	mCV24013552	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	T
ss133787613	ENSMUSSNP6555509	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss321982542	CHEV_6_134781427	CHEVERUD	SCREENING_POP	f	SNP					T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30172668					SNP	T	T	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:134808372 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18077	CpG island 18077	766 bp distal
Crebl2	cAMP responsive element binding protein-like 2	within coordinates
Gm67917	predicted gene, 67917	1314 bp upstream
Rr368197	regulatory region 368197	1145 bp downstream
Rr639728	regulatory region 639728	1325 bp distal
Rr639729	regulatory region 639729	1144 bp distal
Rr639730	regulatory region 639730	within coordinates
Rr639731	regulatory region 639731	927 bp distal
Tssr59250	transcription start site region 59250	1230 bp downstream
Tssr59251	transcription start site region 59251	1139 bp downstream
Tssr59252	transcription start site region 59252	1072 bp downstream
Tssr59253	transcription start site region 59253	635 bp downstream
Tssr59254	transcription start site region 59254	373 bp downstream