rs30172894 SNP Detail

Summary

• ID
  rs30172894
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:46814108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAGA GAGAGGGGCA GGGCCTTGAA
  M
  CTGGAGTGGA CAGGCAGTTG TGAGC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss39158583	mCV25349502	ABI	CRAMUS_MOUSE	f	SNP	A	A	C
ss139387243	ENSMUSSNP3202309	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss324590212	CHEV_14_47196326	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30172894					SNP	A	A	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:46814108 () rs orientation: forward

Symbol	Name	Function Class
Gm49319	predicted gene, 49319	within coordinates
Rr491233	regulatory region 491233	815 bp distal
Rr491234	regulatory region 491234	404 bp distal
Rr491235	regulatory region 491235	1468 bp proximal
Rubie	RNA upstream of Bmp4 expressed in inner ear	800 bp upstream
Tssr128285	transcription start site region 128285	796 bp upstream