rs30173480 SNP Detail

Summary

• ID
  rs30173480
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34249518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CATAGTGCTA CCATTGTGTA TGTGAGTGTA CACTAAAGCC GCTCATGCCC AAGATCTGGA
  AGCCATTAAG TTCGGTCACA GGTGCCCATC CAAATGTGGC CTCATTTTGA CAATTGCTGC
  CATGGCCAAT ATTTATAGTA TTTTTCAAGC TTTCAGGCAG TTAAAAGCCC TTTTATATTA
  ATAACCTTAT ATTGCTCTGT GGTTTAAAAT AGCACAGAAA ATTTCCCCTA CTCACATAGG
  TTTTTATCTA GTATTAGGTG TATTATGTAT TGTATGTGCA ATGTTAGGCT GTATTTTCAG
  Y
  TATGGGGATA ACTGAACCCT GGTTTTTATT CCTAAAAGAT ACTTTCTTTA CAATCACCCT
  GAATTCAAAA AGCAATGAAC TAGTGGCCAG AAAGTCTAGC CCTGTTTTCT ATTTAGGAAA
  GTTGTGGGCA ATTCTATGGC AATTCTGTTG CAATAGCAGA GGGTAAAGGA CTTCAATTAT
  ACCTGCAGTC ATCTGGGTGA CTTTGATTAG AAATATAAAG TAACCCCCGA GATGGGATGA
  ACCAGAAGCA CCCATTCCCT TTCTGAAGGA GCTTGTTTTC GCTGGTGTCT GAGAGCATCA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45403718	mCV25347645	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30173480					SNP	C	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34249518 () rs orientation: forward

Symbol	Name	Function Class
Rr575108	regulatory region 575108	972 bp proximal
Rr575109	regulatory region 575109	1570 bp proximal
Tssr28802	transcription start site region 28802	1373 bp upstream
Tssr28803	transcription start site region 28803	1408 bp upstream
Tssr28804	transcription start site region 28804	1553 bp upstream