rs30173661 SNP Detail

Summary

• ID
  rs30173661
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:15042801 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACCT GTGGGCTGCT CTCCTCTGTC
  Y
  GGCTTCCGAG CAGATCCACT GGCAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss47420472	NES11493413	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T		T	T		C
ss148694467	ENSMUSSNP5036530	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
ss322517231	CHEV_8_14992801	CHEVERUD	SCREENING_POP	f	SNP						C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs30173661					SNP	T	T	T	C	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47420472	NES11493413	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:15042801 () rs orientation: forward

Symbol	Name	Function Class
Arhgef10	Rho guanine nucleotide exchange factor 10	within coordinates
Gm35149	predicted gene, 35149	121 bp downstream
Gm56855	predicted gene, 56855	1298 bp downstream
Gm64037	predicted gene, 64037	1838 bp upstream
Rr368499	regulatory region 368499	1566 bp upstream
Rr660150	regulatory region 660150	within coordinates
Rr660151	regulatory region 660151	41 bp proximal
Rr660152	regulatory region 660152	1348 bp proximal
Rr660153	regulatory region 660153	1849 bp proximal
Tssr76473	transcription start site region 76473	191 bp upstream
Tssr76474	transcription start site region 76474	1846 bp upstream
Tssr80482	transcription start site region 80482	1684 bp downstream