rs30174896 SNP Detail

Summary

• ID
  rs30174896
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106343106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGG GTTTGGTGGG CCCTATGGGT
  R
  GATGCAAGGC TGAGCCTGGC TCGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46379838	mCV23586510	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss136936758	ENSMUSSNP3593865	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
ss323185281	CHEV_9_106368238	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30174896					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106343106 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22268	CpG island 22268	within coordinates
Gpr62	G protein-coupled receptor 62	within coordinates
Pcbp4	poly(rC) binding protein 4	1895 bp downstream
Rr686360	regulatory region 686360	774 bp distal
Rr686361	regulatory region 686361	21 bp proximal
Tssr91318	transcription start site region 91318	1012 bp upstream
Tssr91319	transcription start site region 91319	985 bp upstream
Tssr91320	transcription start site region 91320	605 bp upstream
Tssr91321	transcription start site region 91321	58 bp downstream