rs30175041 SNP Detail

Summary

• ID
  rs30175041
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:47506100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTGGAGGG ACAAGAAGGG
  GATTGGTGGG TTTATCAGAG GTTGAGTAAG GAGGCTCTGT CGTTCCATTT GTTCAATATG
  CTACTTTCTA AGGCTGGGCA AGCACGGGAC TCAGGTGGAC TGAACAGGGA CAGTCCAGGA
  GACGGTGGGG CTGGGAAAAA ATAGCCAACT CTCAGACACA AAGGGCCATT TATGACATTT
  Y
  AAAAGTTACT ACAGTCTATC AGATGTACAA AAAAGGGGTA TTCAATGTCA ATCCCATATT
  GCTTTGGGAC TAAGGACAGT GAGTAGTAGG TGAAGAGTGA AAAGGGGTGT AAGCAGGCTG
  GAGAGATGGC TCAGCGGTTA AGAGCACTGA CTGCTCTTCT GGAGGTCCAG AGTTCAATTC
  CTAGCAACCA CATGGTGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46920961	NES10948171	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30175041					SNP	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46920961	NES10948171	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:47506100 () rs orientation: forward

Symbol	Name	Function Class
Elf4	E74 like ETS transcription factor 4	within coordinates
Rr4085	regulatory region 4085	101 bp proximal
Rr9784	regulatory region 9784	701 bp proximal
Tssr163285	transcription start site region 163285	1925 bp downstream