rs30175534 SNP Detail

Summary

• ID
  rs30175534
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:15043700 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACCCT TCTGTCATAT
  GCTGGCTTGC CAGCAGCATA GAAGCCATGG AACTACTGAA AGCATGGGCC GGAGTCATTT
  GTCCTTTTAA GTTGCTAATG TCAGGTATTT GGTCACAGCC GTGGACGATG GACTGATAGA
  AGTCATGTTG GACACAGCAG GGGTGGGGGA GACCCTCTGT CACAGATTTT GATCTGCTTC
  Y
  GTGTAGCTCG TTGTGCTTCT TATTCGTGTG TGGGTGGGAC AGACAGGTGT GTCAGACCAG
  AATGGACTGG GAAGCCTGGG GCTGAAGGGA AGACATTCTG CAGTGTCTTG TGCCAGCTAT
  TAAGTGGCTT CCACTCCACC TTTGGGAGGC CTTATCAGGC TCTCAGCCTC CAGTGTTCTT
  CCAGTGGTCT TGTGGAGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47420487	NES11493040	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30175534					SNP	T	T	T	T	T	T	T	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47420487	NES11493040	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:15043700 () rs orientation: forward

Symbol	Name	Function Class
Arhgef10	Rho guanine nucleotide exchange factor 10	within coordinates
Gm35149	predicted gene, 35149	within coordinates
Gm56855	predicted gene, 56855	399 bp downstream
Gm64037	predicted gene, 64037	939 bp upstream
Rr368499	regulatory region 368499	667 bp upstream
Rr660150	regulatory region 660150	552 bp distal
Rr660151	regulatory region 660151	837 bp distal
Rr660152	regulatory region 660152	449 bp proximal
Rr660153	regulatory region 660153	950 bp proximal
Tssr76473	transcription start site region 76473	690 bp downstream
Tssr76474	transcription start site region 76474	947 bp upstream
Tssr80482	transcription start site region 80482	785 bp downstream