rs30175537 SNP Detail

Summary

• ID
  rs30175537
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:15043804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATTTGGTC ACAGCCGTGG
  ACGATGGACT GATAGAAGTC ATGTTGGACA CAGCAGGGGT GGGGGAGACC CTCTGTCACA
  GATTTTGATC TGCTTCTGTG TAGCTCGTTG TGCTTCTTAT TCGTGTGTGG GTGGGACAGA
  CAGGTGTGTC AGACCAGAAT GGACTGGGAA GCCTGGGGCT GAAGGGAAGA CATTCTGCAG
  Y
  GTCTTGTGCC AGCTATTAAG TGGCTTCCAC TCCACCTTTG GGAGGCCTTA TCAGGCTCTC
  AGCCTCCAGT GTTCTTCCAG TGGTCTTGTG GAGCTATCCC CAGCCTGGCC ACTAGGGAAG
  ACTAACCCAG TCGAACTCTG CCTGAACGAG AACCCCCGTT CTGTCTCCCA TGTCCAACAG
  TAGTTCCTAG CATCCCAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47420490	NES11493042	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30175537					SNP	T	T	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47420490	NES11493042	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:15043804 () rs orientation: forward

Symbol	Name	Function Class
Arhgef10	Rho guanine nucleotide exchange factor 10	within coordinates
Gm35149	predicted gene, 35149	within coordinates
Gm56855	predicted gene, 56855	295 bp downstream
Gm64037	predicted gene, 64037	835 bp upstream
Rr368499	regulatory region 368499	563 bp upstream
Rr660150	regulatory region 660150	656 bp distal
Rr660151	regulatory region 660151	941 bp distal
Rr660152	regulatory region 660152	345 bp proximal
Rr660153	regulatory region 660153	846 bp proximal
Tssr76473	transcription start site region 76473	794 bp downstream
Tssr76474	transcription start site region 76474	843 bp upstream
Tssr80482	transcription start site region 80482	681 bp downstream