rs30175543 SNP Detail

Summary

• ID
  rs30175543
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:15043991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACATTCTG CAGTGTCTTG
  TGCCAGCTAT TAAGTGGCTT CCACTCCACC TTTGGGAGGC CTTATCAGGC TCTCAGCCTC
  CAGTGTTCTT CCAGTGGTCT TGTGGAGCTA TCCCCAGCCT GGCCACTAGG GAAGACTAAC
  CCAGTCGAAC TCTGCCTGAA CGAGAACCCC CGTTCTGTCT CCCATGTCCA ACAGTAGTTC
  S
  TAGCATCCCA GAACATGCCT GGTGGGCTGT CTGATCTCTG GCACACACAC ACACACACAC
  ACACACACAC ACACACACAC ACACACACAC ACACACAAAC GCTGTGGTTT AGATAGAATA
  AAGACAGTGT TTCAGAGCAG TGTTCACCGC AGCCTGAGTG TTTGAGCCAC TAATGTACTA
  CTGCGCGCAG AAAGTGCCCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47420496	NES11493044	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30175543					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47420496	NES11493044	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:15043991 () rs orientation: forward

Symbol	Name	Function Class
Arhgef10	Rho guanine nucleotide exchange factor 10	within coordinates
Gm35149	predicted gene, 35149	within coordinates
Gm56855	predicted gene, 56855	108 bp downstream
Gm64037	predicted gene, 64037	648 bp upstream
Rr368499	regulatory region 368499	376 bp upstream
Rr660150	regulatory region 660150	843 bp distal
Rr660151	regulatory region 660151	1128 bp distal
Rr660152	regulatory region 660152	158 bp proximal
Rr660153	regulatory region 660153	659 bp proximal
Tssr76473	transcription start site region 76473	981 bp downstream
Tssr76474	transcription start site region 76474	656 bp upstream
Tssr80482	transcription start site region 80482	494 bp downstream