rs30175954 SNP Detail

Summary

• ID
  rs30175954
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:47506452 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGA AAGAAAAGAA AAGAAAAGGG
  Y
  GTGCAGGGAC AGAGGGTAGA GGCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss46479156	mCV25196682	ABI	CRAMUS_MOUSE	f	SNP		T		C
ss46920964	NES10948152	PERLEGEN	MM_PANEL2	f	SNP	T		T		C	C	T		C	C		C
ss134165346	ENSMUSSNP341948	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss325889093	CHEV_X_45770752	CHEVERUD	SCREENING_POP	f	SNP								T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs30175954					SNP	T	T	T	C	C	C	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46920964	NES10948152	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:47506452 () rs orientation: forward

Symbol	Name	Function Class
Elf4	E74 like ETS transcription factor 4	within coordinates
Rr4085	regulatory region 4085	52 bp distal
Rr9784	regulatory region 9784	349 bp proximal
Tssr163285	transcription start site region 163285	1573 bp downstream