rs30175960 SNP Detail

Summary

• ID
  rs30175960
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:47506588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAAGAAA GAAAGAAAGA
  AAGAAAGAAA GAAAGAAAGA AAGAAAGAAA AGAAAAGAAA AGGGCGTGCA GGGACAGAGG
  GTAGAGGCCC AAGGATGCAT CTCGGGGACA ACTCAACGCC ATCTCTGGCT TCCAAAAATG
  TGACAAAAGC CCTCTGTAGA AATGTTTTGG GTGTCTGTGG AGCTAAACTA CCCTTCAACA
  M
  AGAGATGCTA AAGAGGGCTT GTGAAAGAAA AGGGAAATGT TAGAGCCATT TCCTAGAGGG
  GACCAATCAG GTCTTCCTTC AAGTGGGAGA GCCTCCTTGG GCACAGGAAG ATCTTAGTGA
  TCCCTTGGGG AAGAAATTCT GTGTCCCAGC AACTCCTACC TCAGGGCTCG CCCCATGGTC
  TCGTAGTTCA TGTCAGGTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46920970	NES10948155	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30175960					SNP	A	A	A	A	A	A	C	A	A	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46920970	NES10948155	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:47506588 () rs orientation: forward

Symbol	Name	Function Class
Elf4	E74 like ETS transcription factor 4	within coordinates
Rr4085	regulatory region 4085	188 bp distal
Rr9784	regulatory region 9784	213 bp proximal
Tssr163285	transcription start site region 163285	1437 bp downstream